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vahuynh / GENIE3

Machine learning-based approach for the inference of gene regulatory networks from expression data.
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NaN issue for multiprocessing #2

Closed MingBit closed 4 years ago

MingBit commented 5 years ago

Hallo,

An NaN issue occurred whenever GENIE3 works with multiple threads and it stuck at step alloutput = pool.map(wr_GENIE3_single, input_data). As I've checked, no NaN exists in Input ExprData, it might be generated at the mediate step. I'm wondering whether this issue comes up only with multiprocessing or not?? Now I'm testing with single thread... will take a while... :0

MingBit commented 5 years ago

ok..problem solved after remove some low-count genes...