While restructuring the pipeline code, I saw that your current inputs are BAM files, and then you extract the reads to map them again with minimap2—why? There is probably some good reason for that.
We will probably anyway provide more input options in the future, such as POD5 (adding a Dorado process) or FASTQ (and then directly doing the minimap2 mapping, etc...)
Hey,
While restructuring the pipeline code, I saw that your current inputs are BAM files, and then you extract the reads to map them again with
minimap2—why? There is probably some good reason for that.We will probably anyway provide more input options in the future, such as POD5 (adding a
Doradoprocess) or FASTQ (and then directly doing theminimap2mapping, etc...)