valenlab / amplican

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folder_name_format #6

Closed AndreaBarghetti closed 5 years ago

AndreaBarghetti commented 5 years ago

Hi I tried Amplican and worked all very well

In my first attempt however I used amplicanPipeline() inputing folders path with an end dash:

amplicanPipeline("config_file", "fastq/", "results/")

This generate errors when knitting the reports (it will try to find files into "results//...")

I don't know if is it worth specifying it somewhere ("don´t add "/" !!!)

thanks for a nice tool!

JokingHero commented 5 years ago

This should be fixed now, soon bioc devel will update, and not long after that bioc 3.9 will release and it will be fixed there.