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valeriupredoi / bgcval2

Package for BGCVal v2.0
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Output timeseries data as CSV #128

Open ledm opened 3 months ago

ledm commented 3 months ago

I need to extract the output time series data and write it as csv files so I can do it outside of bgcval2. The csv (or mauybe json?) format should be a lot more portable than shelve files.

Probably best open will be to add a "save_as_csv" option into the input.yml file.

In addition to the two columns (time and value), I'd like to include the wider metadata, maybe as a header, including the jobID, region, layer, metric, time shift, line colour and style. That kind of thing would be useful to ensure that the secondairy plots are consistent with bgcval2 output.

ledm commented 3 months ago

Working on this now. It'll need json and a new package jsondiff. I think this is why the tests have been failing.