search

valosekj / dcm-brno

GNU General Public License v3.0
0 stars 0 forks source link

T2w sag - `sct_label_utils -disc` vs `sct_label_vertebrae -discfile` #10

Closed valosekj closed 2 months ago

valosekj commented 7 months ago

Both approaches use manual disc labels located under derivatives/labels

sct_label_utils -disc - no SC straightening:

https://github.com/valosekj/dcm-brno/blob/5919b6a47395e171335d2b10f907a6e85d198f70/scripts/01_process_data.sh#L75

sct_label_vertebrae -discfile:

https://github.com/valosekj/dcm-brno/blob/5919b6a47395e171335d2b10f907a6e85d198f70/scripts/01_process_data.sh#L102

valosekj commented 7 months ago

dcm-brno_2024-02-15/qc --> search for "sct_label_vertebrae" --> sort by "File"

Comparison ![Kapture 2024-02-16 at 07 31 03](https://github.com/valosekj/dcm-brno/assets/39456460/4a692a7a-1cb8-4b71-8644-f610bb1412b7) ![Kapture 2024-02-16 at 07 31 40](https://github.com/valosekj/dcm-brno/assets/39456460/9347c9cf-8bf6-49b8-a3a2-567e65d25007) ![Kapture 2024-02-16 at 07 32 51](https://github.com/valosekj/dcm-brno/assets/39456460/d2a1a84f-ea24-459b-8629-bd901d4ed5f9)

--> sct_label_vertebrae -discfile (i.e., with SC straightening) produces labeled segmentation better reflection cord angulation --> going with this approach