DWI ZOOMit - multiple runs - Githubissues

valosekj / dcm-brno

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DWI ZOOMit - multiple runs #15

Open valosekj opened 2 months ago

valosekj commented 2 months ago

sub-1838B6577B_ses-1838B has two runs for both AP and PA: run-02 contains less motion --> using run-02

cd /md3/dcm-brno/sub-1838B6577B/ses-1838B/dwi/
mkdir notused
mv *run* notused
cd notused
for file in *run-02*;do cp $file ../${file/_run-02/};done

sub-3759B6530B_ses-6530B has two runs for both AP: run-02 contains less motion --> using run-02

cd /md3/dcm-brno/sub-3759B6530B/ses-6530B/dwi/
mkdir notused
mv *run* notused
cd notused
for file in *run-02*;do cp $file ../${file/_run-02/};done

sub-2648B_ses-2648B has two runs for PA: the positioning looks slightly differently: run-02 is aligned with the AP sequence --> using run-02

cd /md3/dcm-brno/sub-2648B/ses-2648B/dwi/
mkdir notused
mv *run* notused
cd notused
for file in *run-02*;do cp $file ../${file/_run-02/};done

sub-3007B_ses-3007B has two runs for AP: run-01 is aligned with the PA sequence --> using run-01

cd /md3/dcm-brno/sub-3007B/ses-3007B/dwi/
mkdir notused
mv *run* notused
cd notused
for file in *run-01*;do cp $file ../${file/_run-01/};done