Open valosekj opened 1 month ago
--> adding both to exclude.yml
in https://github.com/valosekj/dcm-brno/commit/1a8fee4bc9a8347ee9b5692507b8dd2aa025e598
QC:
crop_crop_moco_dwi_mean.nii.gz
- look good for all subjects except for two listed in https://github.com/valosekj/dcm-brno/issues/17#issuecomment-2227452245PAM50_levels.nii.gz
in DWI space) on crop_crop_moco_dwi_mean.nii.gz
- look good for all subjects expect for two listed in https://github.com/valosekj/dcm-brno/issues/17#issuecomment-2227452245
dcm-brno_2024-07-14
-- subjects with surgery (https://github.com/valosekj/dcm-brno/blob/main/surgery.yml)Error logs for two subjects:
details
```bash $ dcm-brno_2024-07-14/log$ for err in err*;do echo $err; tail -30 $err; echo "";done err.02_process_data_sub-3758B6378B_ses-6378B.log itksnap -g sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco_dwi_mean.nii.gz -o label_sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco/template/PAM50_t2.nii.gz label_sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco/template/PAM50_gm.nii.gz label_sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco/template/PAM50_wm.nii.gz + sct_qc -i sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco_dwi_mean.nii.gz -s label_sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco/template/PAM50_levels.nii.gz -p sct_label_vertebrae -qc /md1/valosek/results/dcm-brno_2024-07-14/qc -qc-subject sub-3758B6378B/ses-6378B -- Spinal Cord Toolbox (git-master-65e44b5068fe5d8a094e3e0571566c01d2d460ab) sct_qc -i sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco_dwi_mean.nii.gz -s label_sub-3758B6378B_ses-6378B_acq-ZOOMit_dir-AP_dwi_crop_crop_moco/template/PAM50_levels.nii.gz -p sct_label_vertebrae -qc /md1/valosek/results/dcm-brno_2024-07-14/qc -qc-subject sub-3758B6378B/ses-6378B -- *** Generate Quality Control (QC) html report *** QcImage: layout with Sagittal slice Traceback (most recent call last): File "/home/valosek/code/sct_v6.3/spinalcordtoolbox/scripts/sct_qc.py", line 122, in