T2star - multiple runs; data quality

valosekj / dcm-brno

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T2star - multiple runs; data quality #3

Open valosekj opened 10 months ago

valosekj commented 10 months ago

sub-2741B4963B/ses-4963B has two runs, both 0.35x0.35x2.5mm, the second run has slighly better image quality --> use run-02 (sub-2741B4963B/ses-4963B/anat/sub-2741B4963B_ses-4963B_run-02_T2star.nii.gz)

cd /md3/dcm-brno/sub-2741B4963B/ses-4963B/anat
mkdir notused
mv *run* notused
cp notused/sub-2741B4963B_ses-4963B_run-02_T2star.json sub-2741B4963B_ses-4963B_T2star.json
cp notused/sub-2741B4963B_ses-4963B_run-02_T2star.nii.gz sub-2741B4963B_ses-4963B_T2star.nii.gz

valosekj commented 9 months ago

sub-2450B6177B_ses-6177B_T2star.nii.gz - strong motion -- not usagle for T2star GM seg

valosekj commented 1 month ago

sub-2320B6468B_ses-6468B_T2star.nii.gz - strong motion -- not usagle for T2star GM or SC seg --> adding to exclude.yml

valosekj commented 1 month ago

sub-2349B6345B_ses-2349B_T2star.nii.gz - strong "zig-zag" artifact - SC seg is fine, though

valosekj commented 1 month ago

sub-3056B6483B_ses-6483B_T2star.nii.gz - strong motion -- not usagle for T2star GM seg or SC seg --> adding to exclude.yml

valosekj commented 1 month ago

sub-3758B6378B_ses-6378B_T2star.nii.gz - signal drop due to metal hardware --> adding to exclude.yml

valosekj commented 1 month ago

sub-3998B6406B_ses-6406B_T2star.nii.gz - signal drop due to metal hardware --> adding to exclude.yml