valosekj fsleyes_preset issues

valosekj / fsleyes_preset

Run FSLeyes and automatically set display options

GNU General Public License v3.0

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Automatically set colormap for non-binary masks

#37 valosekj opened 2 months ago
0
`.*mask.*` is too much loose

#36 valosekj opened 1 year ago
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Use `python3 -m venv` instead of `virtualenv` to create virtual environment

#35 valosekj closed 1 year ago
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Open PAM template if pam50 is passed does not work well

#34 valosekj opened 1 year ago
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`seg-manual.nii.gz` is open twice

#33 valosekj opened 1 year ago
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Allow to easily open PAM50 spinal cord template

#32 valosekj closed 1 year ago
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Implement easy way to open PAM50 template

#31 valosekj closed 1 year ago
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Open FSL FEAT zstat file with minimum value `3`

#30 valosekj opened 2 years ago
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Open MNI standard if -std1mm or std1mm is passed

#29 valosekj closed 2 years ago
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Open standard when -std1mm is passed

#28 valosekj closed 2 years ago
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Allow to set min intensity

#27 valosekj closed 2 years ago
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Allow to set min intensity

#26 valosekj closed 2 years ago
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allow variable max intensity decrease

#25 valosekj closed 2 years ago
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Allow variable max intensity decrease

#24 valosekj closed 2 years ago
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Limit fsleyes warnings/errors printed into CLI

#23 valosekj opened 2 years ago
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Improve decision logic for selection of `fsleyes` version

#22 valosekj opened 2 years ago
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`fsleyes_preset` fails during opening preop mask file:

#21 valosekj opened 2 years ago
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Set human readable name to PAM50 atlas labels

#20 valosekj closed 2 years ago
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Hide plane(s)

#19 valosekj opened 2 years ago
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FA could be shown with -ot rgb option

#18 valosekj opened 2 years ago
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introduce get_image_type function to get nifti image datatype and exclude unsupported datatypes

#17 valosekj closed 2 years ago
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Error with get_image_intensities for mddw

#16 valosekj closed 2 years ago
1
Set name to file in FSLeyes

#15 valosekj closed 2 years ago
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Introduce decrease of max intensity to 50%

#14 valosekj closed 3 years ago
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Different behaviour between branches

#13 valosekj opened 3 years ago
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Create config file

#12 valosekj closed 2 years ago
1
Implement setting of max intensity (-dr option) for structural images

#11 valosekj closed 3 years ago
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Set -dr option automatically to 70% for T1-w and T2-w

#10 valosekj closed 3 years ago
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Allow to run the script with *

#9 valosekj closed 3 years ago
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Allow to start script with * (all files in current directory)

#8 valosekj closed 3 years ago
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Fix path to FSLeyes on machines outside fMRI lab

#7 valosekj closed 3 years ago
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fix script_path for both MacOS and Linux

#6 valosekj closed 3 years ago
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Find out if venv is required

#5 valosekj closed 3 years ago
1
Fix path to FSLeyes on machines outside fMRI lab

#4 valosekj closed 3 years ago
0
Get script_path for both Linux and Darwin

#3 valosekj opened 3 years ago
4
Move conversion dict to separate config yaml file

#2 valosekj opened 3 years ago
1
Use regex for file matching and display files without arguments

#1 valosekj closed 3 years ago
0