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vanAmsterdam / lidc-binary-classification

This repository contains code to pre-process the LIDC-IDRI dataset of CT-scans with pulmonary nodules into a binary classification problem, easy to use for learning deep learning
MIT License
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The question of dataset #1

Closed yanfeihong closed 5 years ago

yanfeihong commented 5 years ago

Hello, thank you very much for your project on LIDC binary-classification. However, I have a question, how do you get the image in ".png" format? The original format of the LIDC-IDRI dataset is ".dcm"? Looking forward to your reply, thank you

vanAmsterdam commented 5 years ago

Hi yanfeihong, please follow the README for installing the right python modules. Afterwards, following the steps in 'lidc-preprocessing.ipynb' should give you 2 things: a folder with numpy arrays of the tumor volumes (remember, a scan is 3D so you cannot save an entire scan in png), and a folder with images of slices of the tumors, these are in .png

yanfeihong commented 5 years ago

thinks, I did it！