Confer w/ Kathy about units for pupil position.

vandermeerlab / HD-system-brainstem

Code for analyzing data from recordings in mouse brainstem head direction circuit.

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Confer w/ Kathy about units for pupil position. #14

Open stottbot opened 1 month ago

stottbot commented 1 month ago

Determine how this impacts GLM data comparison, etc.

stottbot commented 1 month ago

Kathy said that we can estimate a scaling coefficient by plotting both the eye and AHV traces and seeing at what value they overlap so that EYE = 0.9 AHV. I did this by desaccading the data and having a manually plot and choose a coefficient step that iterates until the user is satisfied with the overlap. Kathy says she uses +-100ms for desaccading. Kathy says to use velocities below 35 deg / sec for this step.