Create neo issue showing different timestamps depending on available files

vandermeerlab / data-formats

Playing around with different data formats and loaders

MIT License

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Create neo issue showing different timestamps depending on available files #3

Closed mvdm closed 4 years ago

mvdm commented 4 years ago

Minimal working example is here: https://github.com/vandermeerlab/data-formats/blob/master/neo-nept-loading.ipynb

Concern is that the output timestamps for the same file are different depending on whether that file is loaded on its own or with other files present. This is undesirable because:

inconsistent output for same data
difficult/impossible to sync timestamps with outputs from processing not loaded with neo (e.g. MClust spike sorting)

mvdm commented 4 years ago

@yarikoptic is the 32kHz "WidebandTest" example data set publicly available for me to link to? (it's on smaug)

yarikoptic commented 4 years ago

Are you referring to http://datasets.datalad.org/?dir=/labs/mvdm/MotivationalT-v2/R050/R050-2014-03-31_raw?

mvdm commented 4 years ago

The one you link to has only .ntt spikes, not wideband continuous data. Hence the "WidebandTest" folder on incoming/mvdm on smaug.

yarikoptic commented 4 years ago

oh, on http://datasets.datalad.org/?dir=/labs/mvdm/WidebandTest now. It is small, could have even gone to github directly ;-)

mvdm commented 4 years ago

Issue is up now on the neo repo: https://github.com/NeuralEnsemble/python-neo/issues/814