Run Kilosort2 on probe data

vandermeerlab / data-formats

Playing around with different data formats and loaders

MIT License

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Run Kilosort2 on probe data #5

Closed mvdm closed 3 years ago

mvdm commented 4 years ago

[x] Set up linux box with GPU @mvdm
[x] Give Yarik admin privileges @mvdm
[x] Get an example probe data set promoted (ideally 32kHz as well as .ntt) @jgmaz?
[x] Install CUDA and MATLAB on linux box
[x] Figure out how to add Neuronexus probe geometry as input to Kilosort @stottbot this will be interesting for you too!

Useful links:

https://github.com/MouseLand/Kilosort2

mvdm commented 4 years ago

Looks like there are 2 ways of going about this: 1) try to use spikeinterfaces (unclear to me how this will interface with MATLAB) 2) maybe simpler for now, check if we can get it to run in MATLAB by itself first before connecting with spikeinterfaces

manimoh commented 3 years ago

Modified KS2 pipeline using the probe file present here!