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vandijklab / CINEMA-OT

GNU Affero General Public License v3.0
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module 'cinemaot' has no attribute 'utils' #6

Closed ggyycho closed 1 day ago

ggyycho commented 11 months ago

Hi After reading your paper, I thought it was a very useful tool, so I'm using it for my data. Installation proceeded without problem, but the error below occurred :

co.utils.assignleiden(de,'celltype','leiden','typebatch') AttributeError: module 'cinemaot' has no attribute 'utils'

I'll be waiting for your feedback. Thank you.

MingzeDong commented 11 months ago

Thanks! In the current release we are not importing "utils" when we import the package. Therefore you should directly use "from cinemaot import utils" and use "utils.assignleiden(de,'celltype','leiden','typebatch')" instead. Let me know if you encounter further problems.

harishvenkatachalapathy commented 8 months ago

Just wanted to notify you that the tutorial notebook still seems to have a co.utils call that throws an error. It's right after the Leiden clustering.