Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
When running a fresh conda install of Ananse (so the master brench), it crashes on binding. I'm checking (in a bit) which package is different between my old 'master conda env' and the newly generated one. I gues its because some package updated which is breaking stuff.
You can probably replicate the bug by installing Ananse from conda, and running binding with more than 200.000 regions.
2021-10-25 00:09:48 | INFO | No related TF found for ZNF418, using general model
2021-10-25 00:09:48 | DEBUG | Shape of passed values is (200000, 1), indices imply (357758, 1)
2021-10-25 00:09:48 | INFO | No match for ZNF140 based on motifs
2021-10-25 00:09:48 | INFO | No related TF found for ZNF140, using general model
2021-10-25 00:09:48 | DEBUG | Shape of passed values is (200000, 1), indices imply (357758, 1)
2021-10-25 00:09:48 | INFO | Using ENO1 motif with MYC model weights
2021-10-25 00:09:49 | DEBUG | Shape of passed values is (200000, 1), indices imply (357758, 1)
Traceback (most recent call last):
File "/vol/mbconda/jsmits/envs/ananse_master/bin/ananse", line 369, in <module>
args.func(args)
File "/vol/mbconda/jsmits/envs/ananse_master/lib/python3.9/site-packages/ananse/commands/binding.py", line 12, in binding
predict_peaks(
File "/vol/mbconda/jsmits/envs/ananse_master/lib/python3.9/site-packages/ananse/peakpredictor.py", line 792, in predict_peaks
hdf.put(key="_index", value=proba.index.to_series(), format="table")
UnboundLocalError: local variable 'proba' referenced before assignment
When running a fresh conda install of Ananse (so the master brench), it crashes on binding. I'm checking (in a bit) which package is different between my old 'master conda env' and the newly generated one. I gues its because some package updated which is breaking stuff. You can probably replicate the bug by installing Ananse from conda, and running binding with more than 200.000 regions.