clustered motifs for invertebrates

vanheeringen-lab / gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

https://gimmemotifs.readthedocs.io/en/master

MIT License

110 stars 33 forks source link

clustered motifs for invertebrates #282

Open perinom opened 2 years ago

perinom commented 2 years ago

Hi Simon,

great tool, I missed using it!

any chance you have a Drosophila/arthropods/insects/invertebrates version of the clustered vertebrate motifs like gimme.vertebrate.v5.0? Or a code template to generate it?

Thanks!

simonvh commented 2 years ago

I don't I'm afraid. I can't seem to locate the script used to create the database. I would suggest to try `JASPAR2022_insects.pfm.