ebasto
commented
2 months ago Hi mate, I downgraded my GCC and it worked for me. While I'm not sure what's the most appropriate version to use, I did the following:
brew install gcc@12
export CC=/opt/homebrew/bin/gcc-12
then installation
I cannot install gimmemotifs in my anaconda environment with pip, conda, or from source code. I get the same error regardless. Can someone please help? Thank you!
The error occurs here: building 'gimmemotifs.c_metrics' extension Here is a printout of the error mesage: gimmemotifs/c_metrics.c: In function 'get_truncate_len': gimmemotifs/c_metrics.c:315:5: error: type of 'len1' defaults to 'int' [-Wimplicit-int] 315 | int get_truncate_len(len1, len2, pos) { | ^
~~~gimmemotifs/c_metrics.c:315:5: error: type of 'len2' defaults to 'int' [-Wimplicit-int] gimmemotifs/c_metrics.c:315:5: error: type of 'pos' defaults to 'int' [-Wimplicit-int] gimmemotifs/c_metrics.c: In function 'c_metrics_pwmscan': gimmemotifs/c_metrics.c:564:16: warning: unused variable 'pwm_min' [-Wunused-variable] 564 | double pwm_min = -50; | ^~~ gimmemotifs/c_metrics.c:563:13: warning: unused variable 'c' [-Wunused-variable] 563 | int c; | ^ gimmemotifs/c_metrics.c: At top level: gimmemotifs/c_metrics.c:901:22: error: initialization of 'int' from 'void *' makes integer from pointer without a cast [-Wint-conversion] 901 | {NULL, NULL, NULL, 0, NULL} | ^~~~ gimmemotifs/c_metrics.c:901:22: note: (near initialization for 'CoreMethods[4].ml_flags') gimmemotifs/c_metrics.c:901:31: warning: excess elements in struct initializer 901 | {NULL, NULL, NULL, 0, NULL} | ^~~~ gimmemotifs/c_metrics.c:901:31: note: (near initialization for 'CoreMethods[4]')