Closed siebrenf closed 1 year ago
I think I will write a script to generate those files for ATAC-seq anyways, so I could do it for scATAC & ChIP as well
My smallest files that can still generate a SNAPobject still take like 5 min to run succesfully
I am thinking about just making a really really small fastq and only keep 1 chromosome instead of full genome. Should speed things up considerably
if it works for rna-seq too we can throw out the old batch. they are too similar for differential gene expression anyway
@JGASmits, could you provide a (set of) minimal sample(s) that can be used for testing?