Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
yes, only works for shell rules. But if you run nice seq2science it applies to everything. Problem is that nice seq2science + slurm don't work together, so everything gets submitted without niceness
Haven't tried it, but im guessing the niceness in the config overwrites the nice you start the command with
I was thinking about this, but I don't think there should be a default. As that would be unexpected behaviour if you run nice seq2science yourself.
I was looking into this, I'm not sure if that's possible. Probably possible but not very easy
What problem is the PR solving / What's new?
Configurable niceness setting
Checklist