Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Prioritize getting trimmed fastqs, allowing intermediate files to be deleted. After reaching trimmed fastqs, file sizes balloon, so this should minimize disk usage.
I rewrote some other priorities as well, since generating aligner indexes remains a big bottleneck.
Prioritize getting trimmed fastqs, allowing intermediate files to be deleted. After reaching trimmed fastqs, file sizes balloon, so this should minimize disk usage.
I rewrote some other priorities as well, since generating aligner indexes remains a big bottleneck.