Closed manugarciaquismondo closed 5 years ago
Hi,
While it is not easy for me to share the .h5 file, I can provide a notebook that walks through how we trained the MIBI model.
In regards to data, we used data that we did not generate, so I will talk with the owners of the data to see if it is OK to share.
Greetings,
Thank you for your prompt reply. Since it is not easy to share the .h5 file, can you please provide a notebook that I can use to train our MIBI model?
Thank you,
Greetings,
We managed to run the notebook Interior-Edge Segmentation 2D Fully Convolutional and trained a DeepCell model by using the dataset _https://deepcell-data.s3.amazonaws.com/nuclei/HeLa_S3.npz_.
Our aim is to use DeepCell to train a model with MIBI images. We have found that, in the webpage http://www.deepcell.org/predict, a model called mibi is available for training. Can you please provide such a model (in the form of a matrix of model weights in .h5 format) and the image suite that was used to train this model (in the form of a .npz file)?
Thank you very much,