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vanvalenlab / kiosk-imageJ-plugin

An ImageJ Plugin for interacting with the DeepCell Kiosk
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FileNotFoundException if input file is too large. #19

Open willgraf opened 3 years ago

willgraf commented 3 years ago

The following error was encountered when trying to process a multiplex image of size (2000, 2600). While this job should fail, it should fail with the consumer's image size error, not the error found below:

java.io.FileNotFoundException: nullStack.tif (The system cannot find the file specified)
    at java.io.FileInputStream.open0(Native Method)
    at java.io.FileInputStream.open(FileInputStream.java:195)
    at java.io.FileInputStream.<init>(FileInputStream.java:138)
    at okio.Okio__JvmOkioKt.source(JvmOkio.kt:178)
    at okio.Okio.source(Unknown Source)
    at okhttp3.RequestBody$Companion$asRequestBody$1.writeTo(RequestBody.kt:167)
    at okhttp3.MultipartBody.writeOrCountBytes(MultipartBody.kt:157)
    at okhttp3.MultipartBody.writeTo(MultipartBody.kt:93)
    at okhttp3.internal.http.CallServerInterceptor.intercept(CallServerInterceptor.kt:59)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.kt:34)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.kt:96)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.kt:83)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.kt:76)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.connection.RealCall.getResponseWithInterceptorChain$okhttp(RealCall.kt:197)
    at okhttp3.internal.connection.RealCall.execute(RealCall.kt:148)
    at org.vanvalenlab.KioskHttpClient.sendHttpRequest(KioskHttpClient.java:35)
    at org.vanvalenlab.KioskHttpClient.uploadFile(KioskHttpClient.java:87)
    at org.vanvalenlab.KioskJob.create(KioskJob.java:89)
    at org.vanvalenlab.KioskJobManager.runJob(KioskJobManager.java:112)
    at org.vanvalenlab.ImageJobManager.run(ImageJobManager.java:35)
    at ij.IJ.runUserPlugIn(IJ.java:235)
    at ij.IJ.runPlugIn(IJ.java:198)
    at ij.Executer.runCommand(Executer.java:150)
    at ij.Executer.run(Executer.java:68)
    at java.lang.Thread.run(Thread.java:748)

The original image was then cropped and uploaded/processed successfully.

willgraf commented 3 years ago

I'm looking into this error now and cannot reproduce it exactly. Instead, I get the following error: java.net.SocketException: Broken pipe (Write failed). However, the cluster DOES process the job, but the broken pipe prevents any updates from the server.