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vanvalenlab / kiosk-imageJ-plugin

An ImageJ Plugin for interacting with the DeepCell Kiosk
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Error when submitting an image that was created in ImageJ #20

Closed ngreenwald closed 3 years ago

ngreenwald commented 3 years ago

I'm getting the following error when I try and submit an image that was created in ImageJ. Specifically, if I separately load a nuclear channel, membrane channel, and them combine them together in ImageJ, it fails. Saving that combined image to disk, and then loading it, does not produce an error. 

(Fiji Is Just) ImageJ 2.1.0/1.53c; Java 1.8.0_172 [64-bit]; Mac OS X 10.14.6; 279MB of 20677MB (1%)

java.io.FileNotFoundException: /Users/noahgreenwald/Downloads (Is a directory)
    at java.io.FileInputStream.open0(Native Method)
    at java.io.FileInputStream.open(FileInputStream.java:195)
    at java.io.FileInputStream.<init>(FileInputStream.java:138)
    at okio.Okio__JvmOkioKt.source(JvmOkio.kt:178)
    at okio.Okio.source(Unknown Source)
    at okhttp3.RequestBody$Companion$asRequestBody$1.writeTo(RequestBody.kt:167)
    at okhttp3.MultipartBody.writeOrCountBytes(MultipartBody.kt:157)
    at okhttp3.MultipartBody.writeTo(MultipartBody.kt:93)
    at okhttp3.internal.http.CallServerInterceptor.intercept(CallServerInterceptor.kt:59)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.kt:34)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.kt:96)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.kt:83)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.kt:76)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:100)
    at okhttp3.internal.connection.RealCall.getResponseWithInterceptorChain$okhttp(RealCall.kt:197)
    at okhttp3.internal.connection.RealCall.execute(RealCall.kt:148)
    at org.vanvalenlab.KioskHttpClient.sendHttpRequest(KioskHttpClient.java:35)
    at org.vanvalenlab.KioskHttpClient.uploadFile(KioskHttpClient.java:87)
    at org.vanvalenlab.KioskJob.create(KioskJob.java:90)
    at org.vanvalenlab.KioskJobManager.runJob(KioskJobManager.java:112)
    at org.vanvalenlab.ImageJobManager.run(ImageJobManager.java:35)
    at ij.IJ.runUserPlugIn(IJ.java:235)
    at ij.IJ.runPlugIn(IJ.java:198)
    at ij.Executer.runCommand(Executer.java:150)
    at ij.Executer.run(Executer.java:68)
    at java.lang.Thread.run(Thread.java:748)
willgraf commented 3 years ago

Sounds like we should be able to save the combined file as a temporary file and upload it to resolve the issue.