Hi,
I am trying to use the imagej plugin and segment my nuclei image but I get the following error. I will be happy if you could help me.
(Fiji Is Just) ImageJ 2.9.0/1.53t; Java 1.8.0_202 [64-bit]; Mac OS X 10.16; 201MB of 17497MB (1%)
org.vanvalenlab.exceptions.KioskJobFailedException: Traceback (most recent call last):
File "/usr/src/app/redis_consumer/consumers/base_consumer.py", line 201, in consume
status = self._consume(redis_hash)
File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 160, in _consume
image = self.image_dimensions_to_bxyc(dim_order, image)
File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 93, in image_dimensions_to_bxyc
raise ValueError('Input dimension order was {} but input '
ValueError: Input dimension order was but input image has shape (1460, 1936, 3)
at org.vanvalenlab.KioskJobManager.runJob(KioskJobManager.java:158)
at org.vanvalenlab.ImageJobManager.run(ImageJobManager.java:33)
at ij.IJ.runUserPlugIn(IJ.java:237)
at ij.IJ.runPlugIn(IJ.java:203)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at java.lang.Thread.run(Thread.java:748)
Hi, I am trying to use the imagej plugin and segment my nuclei image but I get the following error. I will be happy if you could help me.
(Fiji Is Just) ImageJ 2.9.0/1.53t; Java 1.8.0_202 [64-bit]; Mac OS X 10.16; 201MB of 17497MB (1%)
org.vanvalenlab.exceptions.KioskJobFailedException: Traceback (most recent call last): File "/usr/src/app/redis_consumer/consumers/base_consumer.py", line 201, in consume status = self._consume(redis_hash) File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 160, in _consume image = self.image_dimensions_to_bxyc(dim_order, image) File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 93, in image_dimensions_to_bxyc raise ValueError('Input dimension order was {} but input ' ValueError: Input dimension order was but input image has shape (1460, 1936, 3) at org.vanvalenlab.KioskJobManager.runJob(KioskJobManager.java:158) at org.vanvalenlab.ImageJobManager.run(ImageJobManager.java:33) at ij.IJ.runUserPlugIn(IJ.java:237) at ij.IJ.runPlugIn(IJ.java:203) at ij.Executer.runCommand(Executer.java:152) at ij.Executer.run(Executer.java:70) at java.lang.Thread.run(Thread.java:748)