Hi,
we have an example analysis workflow in the docs.
You can find the code for the visualizations in there here.
Chess does not provide any functionality that is not documented there, every explanation and investigation of your results depends on your data and your question.
Feel free to contact the Vaquerizas lab at https://www.vaquerizaslab.org/contact/ to inquire about a possible collaboration for the analysis of your data.
Best,
Nick
Hi, we have an example analysis workflow in the docs. You can find the code for the visualizations in there here. Chess does not provide any functionality that is not documented there, every explanation and investigation of your results depends on your data and your question. Feel free to contact the Vaquerizas lab at https://www.vaquerizaslab.org/contact/ to inquire about a possible collaboration for the analysis of your data. Best, Nick