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vaquerizaslab / tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
MIT License
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Tadtool tads stops after processing one chromosome #16

Closed MatStz closed 6 years ago

MatStz commented 6 years ago

Hi,

I have a very similar issue than #1, please remove the post if you think it is necessary.

I tried to run tadool tads with two independent sets data. The output file always contains a list of TADS only for the first chromosome listed in the regions.bed file (chromosome 10 in one case, chromosome 1 in the other case). I do use the last version of tadtool (0.76).

Do you have any idea where this problem can come from? I of course checked that matrix files do contain whole genome data.

Thank you!

Mathias

vaquerizaslab-old commented 6 years ago

We are working on this now, I'll update you as soon as we figure out what is going wrong!

vaquerizaslab-old commented 6 years ago

Can you please upgrade to the latest version (should already be available via pip) and let us know if that fixed the issue? Thanks!

MatStz commented 6 years ago

Hi

Seems to work well with the upgrade (0.77)

Thank you very much!

Mathias

vaquerizaslab-old commented 6 years ago

Thank you for reporting this issue and apologies for the complication!