varfish-org / hgvs-rs

A port of biocommons/hgvs to the Rust programming language
Apache License 2.0
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Address stop codon recoding / stop codon readthrough (SCR) #143

Open holtgrewe opened 10 months ago

holtgrewe commented 10 months ago

Is your feature request related to a problem? Please describe. We currently do not properly handle SCR, e.g., in SELENON.

Describe the solution you'd like Address this issue.

Describe alternatives you've considered N/A

Additional context

holtgrewe commented 10 months ago

We already have the proper selenoprotein translation table:

https://github.com/bihealth/hgvs-rs/blob/b025ff27436af6228c8156d0f8007bdf1dde1032/src/sequences.rs#L1124

holtgrewe commented 8 months ago

We really need to double-check whether our selenoprotein support is sufficient.