varfish-org / hgvs-rs

A port of biocommons/hgvs to the Rust programming language
Apache License 2.0
11 stars 4 forks source link

feat: allow for disabling renormalization #53

Closed holtgrewe closed 1 year ago

holtgrewe commented 1 year ago

This is useful if the genome sequence is not available in the provider to save memory/storage

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 77.77% and no project coverage change.

Comparison is base (2db5e92) 88.03% compared to head (9e725db) 88.04%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #53 +/- ## ======================================= Coverage 88.03% 88.04% ======================================= Files 19 19 Lines 7415 7419 +4 ======================================= + Hits 6528 6532 +4 Misses 887 887 ``` | [Impacted Files](https://codecov.io/gh/bihealth/hgvs-rs/pull/53?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth) | Coverage Δ | | |---|---|---| | [src/mapper/variant.rs](https://codecov.io/gh/bihealth/hgvs-rs/pull/53?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL21hcHBlci92YXJpYW50LnJz) | `90.77% <0.00%> (-0.12%)` | :arrow_down: | | [src/validator/mod.rs](https://codecov.io/gh/bihealth/hgvs-rs/pull/53?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL3ZhbGlkYXRvci9tb2QucnM=) | `65.57% <ø> (ø)` | | | [src/normalizer.rs](https://codecov.io/gh/bihealth/hgvs-rs/pull/53?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL25vcm1hbGl6ZXIucnM=) | `71.31% <85.71%> (+0.15%)` | :arrow_up: | | [src/mapper/assembly.rs](https://codecov.io/gh/bihealth/hgvs-rs/pull/53?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth#diff-c3JjL21hcHBlci9hc3NlbWJseS5ycw==) | `80.26% <100.00%> (+0.08%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bihealth)

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