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varfish-org / mehari

VEP-like tool for sequence ontology and HGVS annotation of VCF files
MIT License
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build(deps): bump the noodles group with 6 updates #410

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Bumps the noodles group with 6 updates:

Package From To
noodles-bgzf 0.26.0 0.27.0
noodles-csi 0.30.0 0.31.0
noodles-fasta 0.33.0 0.34.0
noodles-tabix 0.36.0 0.37.0
noodles-vcf 0.49.0 0.50.0
seqrepo 0.10.0 0.10.1

Updates noodles-bgzf from 0.26.0 to 0.27.0

Commits
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • 43da5c5 sam/alignment/record/flags: Rename PROPERLY_ALIGNED to PROPERLY_SEGMENTED
  • 71c8de5 sam/alignment/record/flags: Update description
  • 833fd4b bam/record/codec/encoder/quality_scores: Fix typo
  • 8c7014c Bump versions for noodles 0.65.0
  • 5c0b64a fasta/repository: Make Repository thread-safe
  • Additional commits viewable in compare view


Updates noodles-csi from 0.30.0 to 0.31.0

Commits
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • 43da5c5 sam/alignment/record/flags: Rename PROPERLY_ALIGNED to PROPERLY_SEGMENTED
  • 71c8de5 sam/alignment/record/flags: Update description
  • 833fd4b bam/record/codec/encoder/quality_scores: Fix typo
  • 8c7014c Bump versions for noodles 0.65.0
  • 5c0b64a fasta/repository: Make Repository thread-safe
  • Additional commits viewable in compare view


Updates noodles-fasta from 0.33.0 to 0.34.0

Commits
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • 43da5c5 sam/alignment/record/flags: Rename PROPERLY_ALIGNED to PROPERLY_SEGMENTED
  • 71c8de5 sam/alignment/record/flags: Update description
  • 833fd4b bam/record/codec/encoder/quality_scores: Fix typo
  • See full diff in compare view


Updates noodles-tabix from 0.36.0 to 0.37.0

Commits
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • 43da5c5 sam/alignment/record/flags: Rename PROPERLY_ALIGNED to PROPERLY_SEGMENTED
  • 71c8de5 sam/alignment/record/flags: Update description
  • 833fd4b bam/record/codec/encoder/quality_scores: Fix typo
  • 8c7014c Bump versions for noodles 0.65.0
  • 5c0b64a fasta/repository: Make Repository thread-safe
  • Additional commits viewable in compare view


Updates noodles-vcf from 0.49.0 to 0.50.0

Commits
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • 43da5c5 sam/alignment/record/flags: Rename PROPERLY_ALIGNED to PROPERLY_SEGMENTED
  • 71c8de5 sam/alignment/record/flags: Update description
  • 833fd4b bam/record/codec/encoder/quality_scores: Fix typo
  • 8c7014c Bump versions for noodles 0.65.0
  • 5c0b64a fasta/repository: Make Repository thread-safe
  • Additional commits viewable in compare view


Updates seqrepo from 0.10.0 to 0.10.1

Release notes

Sourced from seqrepo's releases.

v0.10.1

0.10.1 (2024-03-07)

Bug Fixes

Changelog

Sourced from seqrepo's changelog.

0.10.1 (2024-03-07)

Bug Fixes

Commits
  • aada2fe chore(main): release 0.10.1 (#101)
  • 6d6c1e2 build(deps): bump the noodles group with 1 update (#97)
  • 1e0974c build(deps): update rusqlite requirement from 0.30 to 0.31 (#96)
  • 4b6e531 build(deps): bump actions/add-to-project from 0.5.0 to 0.6.0 (#98)
  • 19eb0d6 fix: use column for seqid alias query (#100)
  • See full diff in compare view


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dependabot[bot] commented 3 months ago

Superseded by #429.