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varfish-org / mehari

VEP-like tool for sequence ontology and HGVS annotation of VCF files
MIT License
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fix: actually produce one tsv record per gene+annotations #413

Closed tedil closed 3 months ago

tedil commented 3 months ago

This addresses #409 by moving the writeln! invocation to the correct scope, such that one TSV record is produced per gene with its annotations, instead of a single record corresponding to the last gene in the list.

todo: add testcase

codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 76.36%. Comparing base (b735a68) to head (eaa6ff5).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #413 +/- ## ========================================== + Coverage 76.06% 76.36% +0.29% ========================================== Files 24 24 Lines 5093 5106 +13 ========================================== + Hits 3874 3899 +25 + Misses 1219 1207 -12 ```

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xiamaz commented 3 months ago

Taurpaulin works locally fine, will fix CI issues separately.