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varfish-org / mehari

VEP-like tool for sequence ontology and HGVS annotation of VCF files
MIT License
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build(deps): bump the noodles group with 6 updates #429

Closed dependabot[bot] closed 7 months ago

dependabot[bot] commented 7 months ago

Bumps the noodles group with 6 updates:

Package From To
noodles-bgzf 0.26.0 0.28.0
noodles-csi 0.30.0 0.32.0
noodles-fasta 0.33.0 0.35.0
noodles-tabix 0.36.0 0.38.0
noodles-vcf 0.49.0 0.51.0
seqrepo 0.10.0 0.10.1

Updates noodles-bgzf from 0.26.0 to 0.28.0

Commits
  • 4f72542 Bump versions for noodles 0.67.0
  • 59d8097 sam/io/reader: Add example for Reader::records
  • c3f9878 sam/io/writer/header/record/value/map: Add value validation
  • 3b3e750 bam/io/reader/record: Disallow partial block sizes
  • da145c6 bgzf/async/block_codec: Allow final frame to be incomplete
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • Additional commits viewable in compare view


Updates noodles-csi from 0.30.0 to 0.32.0

Commits
  • 4f72542 Bump versions for noodles 0.67.0
  • 59d8097 sam/io/reader: Add example for Reader::records
  • c3f9878 sam/io/writer/header/record/value/map: Add value validation
  • 3b3e750 bam/io/reader/record: Disallow partial block sizes
  • da145c6 bgzf/async/block_codec: Allow final frame to be incomplete
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • Additional commits viewable in compare view


Updates noodles-fasta from 0.33.0 to 0.35.0

Commits
  • 4f72542 Bump versions for noodles 0.67.0
  • 59d8097 sam/io/reader: Add example for Reader::records
  • c3f9878 sam/io/writer/header/record/value/map: Add value validation
  • 3b3e750 bam/io/reader/record: Disallow partial block sizes
  • da145c6 bgzf/async/block_codec: Allow final frame to be incomplete
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • Additional commits viewable in compare view


Updates noodles-tabix from 0.36.0 to 0.38.0

Commits
  • 4f72542 Bump versions for noodles 0.67.0
  • 59d8097 sam/io/reader: Add example for Reader::records
  • c3f9878 sam/io/writer/header/record/value/map: Add value validation
  • 3b3e750 bam/io/reader/record: Disallow partial block sizes
  • da145c6 bgzf/async/block_codec: Allow final frame to be incomplete
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • Additional commits viewable in compare view


Updates noodles-vcf from 0.49.0 to 0.51.0

Commits
  • 4f72542 Bump versions for noodles 0.67.0
  • 59d8097 sam/io/reader: Add example for Reader::records
  • c3f9878 sam/io/writer/header/record/value/map: Add value validation
  • 3b3e750 bam/io/reader/record: Disallow partial block sizes
  • da145c6 bgzf/async/block_codec: Allow final frame to be incomplete
  • dc5919a Bump versions for noodles 0.66.0
  • 51a824f bam/record/data/field/value/array/values: Fix value count calculation
  • b194d59 bgzf/writer: Fix the default visibility of CompressionLevelImpl
  • e9b4101 htsget: Update to base64 0.22.0
  • f80ac45 bgzf/multithreaded_writer: Add builder
  • Additional commits viewable in compare view


Updates seqrepo from 0.10.0 to 0.10.1

Release notes

Sourced from seqrepo's releases.

v0.10.1

0.10.1 (2024-03-07)

Bug Fixes

Changelog

Sourced from seqrepo's changelog.

0.10.1 (2024-03-07)

Bug Fixes

Commits
  • aada2fe chore(main): release 0.10.1 (#101)
  • 6d6c1e2 build(deps): bump the noodles group with 1 update (#97)
  • 1e0974c build(deps): update rusqlite requirement from 0.30 to 0.31 (#96)
  • 4b6e531 build(deps): bump actions/add-to-project from 0.5.0 to 0.6.0 (#98)
  • 19eb0d6 fix: use column for seqid alias query (#100)
  • See full diff in compare view


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dependabot[bot] commented 7 months ago

Superseded by #432.