Closed holtgrewe closed 1 year ago
Describe the bug For input as below
19 5687506 . GC GT
The first base should be trimmed. The annotator does this but does not update the position leading to a wrong location.
19 5687506 . C T
The correct output is
19 5687507 . C T
Such input is probably rare, affects multiallelic sites, and did not occur previously as our installation does this normalization with bcftools norm.
bcftools norm
Describe the bug For input as below
The first base should be trimmed. The annotator does this but does not update the position leading to a wrong location.
The correct output is
Such input is probably rare, affects multiallelic sites, and did not occur previously as our installation does this normalization with
bcftools norm.