varfish-org / varfish-cli

VarFish REST API client (CLI + Python package)
MIT License
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Extend phenopacket YAML bootstrapping #73

Open holtgrewe opened 1 year ago

holtgrewe commented 1 year ago

Is your feature request related to a problem? Please describe.

70 adds support for bootstrapping phenopackets YAML files. However, the handling of quality control files and read alignment files is still unimplemented.

Describe the solution you'd like Add support for automatically detecting quality control file types and support for interpreting BAM files.

Describe alternatives you've considered N/A

Additional context