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varfish-org / varfish-server

VarFish: comprehensive DNA variant analysis for diagnostics and research
MIT License
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exon coverage #2040

Open stolpeo opened 1 month ago

stolpeo commented 1 month ago

There has been the request to display the coverage of an exon upon request, or more specific if the coverage of the exons of a gene have at least X coverage, or if an exon has insufficient coverage.

stolpeo commented 1 month ago

this information is currently not available in varfish. probably the information should come from the pipeline and somehow be imported into varfish using a new data structure. how and where this information should be made available is up for discussion.

holtgrewe commented 1 month ago

I agree, we need to find a solution with either pre-compute for all exon or retrieve online from BAM.