varioustoxins
commented
3 days ago Thank you so much for that, i have trying to sort what causes that for a while i will test it soon!
Open shernyukov opened 3 days ago
varioustoxins
commented
3 days ago Thank you so much for that, i have trying to sort what causes that for a while i will test it soon!
varioustoxins
commented
3 days ago Could you let me know what is and version you are on?
shernyukov
commented
3 days ago Could you let me know what is and version you are on?
OK, Let me know if you need anything else!
openSUSE Leap 15.6
AnalysisAssign, version: 3.2.5
${CONDA_PYTHON3} -m pip list
Package Version
----------------------------- ---------------
alabaster 0.7.13
annotated-types 0.6.0
asteval 0.9.30
asttokens 2.2.1
attrs 24.2.0
autopep8 2.0.2
Babel 2.12.1
backcall 0.2.0
backports.functools-lru-cache 1.6.5
backports.tarfile 1.2.0
beautifulsoup4 4.12.3
biopython 1.81
bracex 2.5
brotlipy 0.7.0
build 1.2.2
cached-property 1.5.2
cachetools 5.3.3
certifi 2023.5.7
cffi 1.15.1
charset-normalizer 3.1.0
click 8.1.3
click-completion 0.5.2
colorama 0.4.6
comm 0.1.3
contourpy 1.1.0
crayons 0.4.0
cryptography 39.0.2
cycler 0.11.0
Cython 0.29.35
daal4py 2023.1.1
debugpy 1.6.7
decorator 5.1.1
docutils 0.20.1
docx 0.2.4
emcee 3.1.4
et-xmlfile 1.1.0
exceptiongroup 1.1.1
executing 1.2.0
f-yeah 0.3.0
fastaparser 1.1.1
fonttools 4.40.0
freezegun 1.1.0
frozendict 2.3.7
future 0.18.3
h5py 3.9.0
hjson 3.1.0
icecream 2.1.3
idna 3.4
imageio 2.31.1
imagesize 1.4.1
importlib-metadata 6.7.0
iniconfig 2.0.0
ipykernel 6.23.3
ipython 8.12.2
ipython-genutils 0.2.0
jax 0.4.13
jedi 0.18.2
Jinja2 3.1.2
joblib 1.3.0
jupyter_client 8.3.0
jupyter_core 5.3.1
kiwisolver 1.4.4
llvmlite 0.40.1
lmfit 1.2.1
lxml 4.9.2
MarkupSafe 2.1.3
matplotlib 3.7.1
matplotlib-inline 0.1.6
memory-profiler 0.61.0
ml-dtypes 0.2.0
mmcif-pdbx 2.0.1
mpmath 1.3.0
munkres 1.1.4
nef_pipelines 0.1.92
nest-asyncio 1.5.6
nmrglue 0.9
nmrsim 0.6.0.post1
nose 1.3.7
numba 0.57.1
numdifftools 0.9.41
numpy 1.24.4
onedep-api 0.19
openpyxl 3.1.2
opt-einsum 3.3.0
ordered-set 4.1.0
packaging 23.1
pandas 1.5.3
parse 1.20.1
parso 0.8.3
path 16.6.0
pathspec 0.11.1
patsy 0.5.3
pep8 1.7.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 9.5.0
Pint 0.22
pip 23.1.2
platformdirs 3.8.0
pluggy 1.2.0
ply 3.11
pooch 1.7.0
prompt-toolkit 3.0.38
psutil 5.9.5
ptyprocess 0.7.0
pure-eval 0.2.2
py 1.11.0
pycodestyle 2.10.0
pycparser 2.21
pycycle 0.0.8
pydantic 2.6.3
pydantic_core 2.16.3
pyflakes 3.0.1
Pygments 2.15.1
pynmrstar 3.3.2
PyOpenGL 3.1.7
PyOpenGL-accelerate 3.1.7
pyOpenSSL 23.2.0
pyparsing 3.0.8
pyproject_hooks 1.1.0
pyqode-core 4.0.11
pyqode.python 4.0.2
pyqode.qt 2.10.0
PyQt5 5.15.7
PyQt5-sip 12.11.0
PyQtChart 5.15.5
pyqtgraph 0.13.1
PyQtWebEngine 5.15.4
PySocks 1.7.1
pytest 7.1.3
pytest-mock 3.12.0
python-dateutil 2.8.2
python-pptx 0.6.21
pytz 2023.3.post1
pyzmq 25.1.0
QtAwesome 1.2.3
qtconsole 5.3.2
QtPy 2.3.1
rdkit 2023.3.2
reportlab 3.5.68
requests 2.31.0
runstats 2.0.0
scikit-learn 1.3.0
scikit-learn-intelex 20230426.134828
scipy 1.10.1
seaborn 0.12.2
setuptools 75.1.0
shellingham 1.5.0.post1
sip 6.7.9
six 1.16.0
snowballstemmer 2.2.0
soupsieve 2.6
sparse 0.14.0
Sphinx 7.0.1
sphinxcontrib-applehelp 1.0.4
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 2.0.1
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.5
stack-data 0.6.2
statsmodels 0.14.0
StrEnum 0.4.8
sympy 1.12
tabulate 0.8.9
threadpoolctl 3.1.0
toml 0.10.2
tomli 2.0.1
tornado 6.3.2
tqdm 4.65.0
traitlets 5.9.0
treelib 1.7.0
typer 0.7.0
typing_extensions 4.12.2
uncertainties 3.1.7
unicodedata2 15.0.0
urllib3 1.26.15
wcmatch 8.5
wcwidth 0.2.6
wheel 0.44.0
xlrd 2.0.1
XlsxWriter 3.1.2
xmltodict 0.13.0
zipp 3.15.0My os is OpenSUSE Leap 15.6, which is linux distro.
чт, 19 сент. 2024 г. в 23:15, varioustoxins @.***>:
Sorry could you say which os and version macOS auto corrected me!
— Reply to this email directly, view it on GitHub https://github.com/varioustoxins/NEF-Pipelines/issues/4#issuecomment-2361449520, or unsubscribe https://github.com/notifications/unsubscribe-auth/BLNFV2CNEAZMRRS3ZDB3KN3ZXL2AHAVCNFSM6AAAAABOPN3KFWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNRRGQ2DSNJSGA . You are receiving this because you authored the thread.Message ID: @.***>
varioustoxins
commented
2 days ago @shernyukov Thank you, I have implemented the fix and it seems to work. However, do you follow why this is suddenly needed when installing using pip3, I can't seem to find more details.... I presume an update to setup tools uses too modern a version of tarfile for the one in conda?
In the script "install_nef_pipelines" in cppnmr3/bin path, it needs to add the installation with "-m pip" of the "backports.tarfile" package for successful compilation:
"${CONDA_PYTHON3}" -m pip install --upgrade wheel setuptools backports.tarfileOtherwise, the installation is interrupted with the following error: "ERROR: Can not executesetup.pysince setuptools is not available in the build environment"