insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarkers for patient stratification.
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Is iPANDA compatible with RNA-seq data? More specifically, single-cell RNA-seq data? #1
Yes, it is. But the input data should be converted to gene expression format described in the manual.