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vastgroup / vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.
MIT License
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Type column in final combine output #10

Closed mirimia closed 10 years ago

mirimia commented 10 years ago

Hi Kevin,

I think it'd be good to simplify a bit the "Complex" or "Type" column (the 6th) in the final output (last one provided in the template). One way would be to directly change the template, but I think it'd be easier (given the template is part of the VASTDB, so we would have to re-upload the whole package and all that [I don't have direct access to the server yet]) to just add a quick couple of substitutions when loading the template in Add_to_FULL.pl.

My suggestions a this point (while writing the output format):

And that's it...

I could do those changes myself, but since you adapted that part of the script, I don't want to mess it up more than necessary.

Thanks, Manu

kcha commented 10 years ago

Sure, will get this change added. I do agree that perhaps in the next VASTDB release, we should fix this in the templates.