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vastgroup / vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.
MIT License
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nanopore long read RNA seq #103

Closed charlinejonson closed 2 years ago

charlinejonson commented 2 years ago

Hi, how would vast-tools perform with long read RNA seq data? Thank you, Charline

mirimia commented 2 years ago

Hello,

Unfortunately, I doubt it will do well (assuming it can be run). It will split the long reads into chunk and use only one of the matches to avoid multiple counting.

Sorry!