After running vast-tools align with --exprONLY flag, the combine step fails because it can't find any files in to_combine folder:
> vast-tools align -sp Hsa -exprONLY <sample>
> vast-tools combine
[vast combine error]: Could not find any samples in vast_out/to_combine.
The issue is that RunDBS_2.pl checks for files in to_combine first. If there are 0 files found, then the script issues an error and exits. It does not consider if there are files in the expr_out folder.
After running vast-tools align with --exprONLY flag, the combine step fails because it can't find any files in
to_combinefolder:The issue is that
RunDBS_2.plchecks for files into_combinefirst. If there are 0 files found, then the script issues an error and exits. It does not consider if there are files in theexpr_outfolder.