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vastgroup / vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.
MIT License
77 stars 28 forks source link

install.R - Rscript not found #8

Closed funnell closed 10 years ago

funnell commented 10 years ago

The install.R script hard codes the path to Rscript. This won't work on systems with R installations not in the expected location. I've been using:

!/usr/bin/env Rscript

with my R scripts. This seems to work fine for the install.R script as long as you don't mind excluding the --vanilla part.

timbitz commented 10 years ago

Yup.. that should have already been changed, my bad. Now swapped. Thanks!

timbitz commented 10 years ago

Hey Tyler, I actually just found one more R script (for the intron retention analysis) in there using /usr/bin/Rscript. I just pushed the updated shebang... Cheers, -Tim