information provided by vat-dp

vatlab / VarStore

High Efficiency genotype data storage library

http://vatlab.github.io/VarStore/

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information provided by vat-dp #1

Open jma7 opened 7 years ago

jma7 commented 7 years ago

VAT will query vat-dp mainly with variant ID for now. Other than genotypes, what information will be provided by vat-dp? Allele frequency, DP, Allele Count, etc? or these information will be provided by vat-vs?

BoPeng commented 7 years ago

Let us not worry about derived (statistics) for now and focus on whatever provided by VCF files. Basically, vat will query for genotype and whatever info and genotype fields in vcf files. DP should accept query on what information and genotype fields are available and in which format.