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vatlab / VarStore

High Efficiency genotype data storage library
http://vatlab.github.io/VarStore/
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compare performance of sqlite and hdf5 version of variantTools #17

Open jma7 opened 6 years ago

jma7 commented 6 years ago

I will update some of the performance test on variants storage and retrieval here. I wrote a script to record time, memory and disk usage of variantTools import and association steps. Please check below graphs for a test run on chr22 of 1000 genomes.

slide2 slide3

BoPeng commented 6 years ago

Thanks. Looks promising.