search

vatlab / sos

SoS workflow system for daily data analysis
http://vatlab.github.io/sos-docs
BSD 3-Clause "New" or "Revised" License
274 stars 45 forks source link

Tab completion crashing IRkernel #1506

Closed pgcudahy closed 1 year ago

pgcudahy commented 2 years ago

Hello Bo, I'm having an issue with tab completion in SoS notebooks. In a standard R notebook (with IRkernel) it works fine, but if I hit tab in an R cell in SoS then the busy indicator lights up and the whole notebook hangs. Sometimes an interrupt will fix it, but often I have to restart the kernel. The jupyter logs aren't too helpful, even with the --debug flag. They show

Nov 22 07:42:46 WhitePlague jupyter[1732]: [D 07:42:46.487 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: status (busy)
Nov 22 07:42:46 WhitePlague jupyter[1732]: [D 07:42:46.488 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: status (idle)
Nov 22 07:42:47 WhitePlague jupyter[1732]: [D 07:42:47.236 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: status (busy)
Nov 22 07:42:47 WhitePlague jupyter[1732]: [D 07:42:47.238 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: status (idle)
Nov 22 07:42:49 WhitePlague jupyter[1732]: [D 07:42:49.477 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: status (busy)
Nov 22 07:42:50 WhitePlague jupyter[1732]: [D 07:42:50.455 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: comm_msg
Nov 22 07:42:50 WhitePlague jupyter[1732]: [D 07:42:50.720 NotebookApp] activity on 05eddf7d-25f3-4ee5-8955-29b49e50becb: stream
Nov 22 07:42:51 WhitePlague jupyter[1732]: [D 07:42:51.217 NotebookApp] 304 GET /notebook/static/base/images/favicon-busy-1.ico (127.0.0.1) 1.410000ms

It also hangs in bash cells but tab completion works in python cells. Any ideas on how to further debug this?

BoPeng commented 1 year ago

@pgcudahy Sorry that I somehow missed this ticket. A lot has changed since your report and I just released sos-notebook 0.24.0, along with new versions of all language modules. Could you please check if this problem still exists after you upgrade to the newest release? I just tried to complete on a R kernel in jupyter lab and everything seems to be working.

image
pgcudahy commented 1 year ago

Works well now! Thanks, and I'll go ahead and close the issue.