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vatlab / varianttools

software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
https://vatlab.github.io/vat-docs/
GNU General Public License v3.0
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Hg38 support #152

Closed akshayzawar closed 3 years ago

akshayzawar commented 3 years ago

Is there hg38 genome build for human genome available in variant_tools? I could not find any help with regard to this.

Thanks, Akshay

BoPeng commented 3 years ago

What happened if you specify hg38 as parameter of --build? It should use hg38 as default reference and download it's reference genome.l

akshayzawar commented 3 years ago

Thank you for your reply. The documentation doesn't mention about hg38 genome build. That's where I got confused. However, hg38 in --build option seems to be working.

You may need to update the documentation.

BoPeng commented 3 years ago

You may need to update the documentation.

It is certainly mentioned somewhere, but I guess not obvious enough.