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vatlab / varianttools

software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
https://vatlab.github.io/vat-docs/
GNU General Public License v3.0
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vtools remove genotype does not work for hdf5 #46

Open BoPeng opened 7 years ago

BoPeng commented 7 years ago

This one is even more difficult than remove variant because we are using a condition on genotype fields to remove genotype (code). The query is something like

DELETE FROM genotype_1 WHERE DP > 10

for condition DP > 10.

Perhaps we should leave this for later.

jma7 commented 7 years ago

Remove means set to None?

BoPeng commented 7 years ago

In sqlite, the rows are removed.