Use snakefmt 0,6,1 until superlinter bumps version and we have to fix everything agin - Githubissues

vdblab / vdblab-shotgun

Shotgun metagenomic sequencing processing pipeline

MIT License

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Use snakefmt 0,6,1 until superlinter bumps version and we have to fix everything agin #22

Closed nickp60 closed 1 year ago

nickp60 commented 1 year ago

Snakefmt used by superlinter v4.9.7 is at version 0.6.1. snakefmt versions 0.6.1, 0.7, and yesterday's 0.8 versions all yield different files. A few hours ago the superlinter team bumped to 0.8. We currently specify the linter github action with @4 , so at some point the version used is going to switch (unless they go straight to version5). So for now:

snakefmt locally with 0.6.1
if you do that and then get linter issues on the github action, check the action version used. Then check the repo to try to find what snakefmt should be used locally.

nickp60 commented 1 year ago

Closing this for now, as superlinter has been bumped to use 0.8.2.