It appears that the annotate_split_assembly checkpoint is being retriggered by join_CAZI and then errorring with a ProtectedOutputException. Possibly related to https://github.com/snakemake/snakemake/issues/884?
cat /data/brinkvd/isabl/data_lake/analyses/17/57/11757/logs/cluster/annotate_join_CAZI/unique/jobid6_6916c4cb-72b0-49d0-90a3-ae43bb5517a2.err
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Provided resources: mem_mb=1000, disk_mb=1000
Conda environments: ignored
Select jobs to execute...
ProtectedOutputException in rule annotate_split_assembly in line 158 of https://github.com/vdblab/vdblab-shotgun/raw/0.4.0/workflow/rules/annotate.smk:
Write-protected output files for rule annotate_split_assembly:
output: tmp, tmp-megahit_14026_GB101B_HJ2T2DSX5.assembly.fasta
affected files:
tmp-megahit_14026_GB101B_HJ2T2DSX5.assembly.fasta
nickp60
commented
1 year ago
It appears that the annotate_split_assembly checkpoint is being retriggered by join_CAZI and then errorring with a
ProtectedOutputException. Possibly related to https://github.com/snakemake/snakemake/issues/884?