PSA: Use Snakemake >= 7.19

vdblab / vdblab-shotgun

Shotgun metagenomic sequencing processing pipeline

MIT License

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PSA: Use Snakemake >= 7.19 #62

Closed nickp60 closed 1 year ago

nickp60 commented 1 year ago

I had a strange situation where some jobs were getting submitted to the cluster and hanging indefinitely in "S" state. Upgrading from Snakemake 7.18.2 to 7.19.1 or beyond fixed this. Leaving the issue here in case someone else finds this useful.

funnell commented 1 year ago

We could add a min_version statement to ensure this... maybe in the main snakefile?