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vdblab / vdblab-shotgun

Shotgun metagenomic sequencing processing pipeline
MIT License
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Split kraken rule to not run kraken and phanta #71

Open nickp60 opened 1 year ago

nickp60 commented 1 year ago

Phanta now has many databases and it is getting clunkier to try to bundle it into a single stage. Lets split this back out.

an alternative would be to add the genome size files to all the kraken databases we use, run kraken/bracken against a list of databases, and run the genome size correction script from phanta on all