We have over 20,000 mzML data files and their corresponding quant files. When we tried to use Diann to merge them into a protein matrix, we encountered the error message "/var/spool/slurmd/job532496/slurm_script: line 9: /soft/bio/DiaNN-1.8.1/untar/diann-1.8.1: Argument list too long." However, we didn't encounter any issues when we restarted the search process from the first step using the same 20,000+ mzML files. How can we resolve this issue?
We have over 20,000 mzML data files and their corresponding quant files. When we tried to use Diann to merge them into a protein matrix, we encountered the error message "/var/spool/slurmd/job532496/slurm_script: line 9: /soft/bio/DiaNN-1.8.1/untar/diann-1.8.1: Argument list too long." However, we didn't encounter any issues when we restarted the search process from the first step using the same 20,000+ mzML files. How can we resolve this issue?