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vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.
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/var/spool/slurmd/job532496/slurm_script: line 9: /soft/bio/DiaNN-1.8.1/untar/diann-1.8.1: Argument list too long #1002

Open xuezhangzhi opened 3 months ago

xuezhangzhi commented 3 months ago

We have over 20,000 mzML data files and their corresponding quant files. When we tried to use Diann to merge them into a protein matrix, we encountered the error message "/var/spool/slurmd/job532496/slurm_script: line 9: /soft/bio/DiaNN-1.8.1/untar/diann-1.8.1: Argument list too long." However, we didn't encounter any issues when we restarted the search process from the first step using the same 20,000+ mzML files. How can we resolve this issue?

vdemichev commented 3 months ago

This can be solved by putting the list of --f commands in a cfg file and referencing it with --cfg.